Last updated: 2024-08-07

Checks: 2 0

Knit directory: mi_spatialomics/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: dd41748

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version dd41748. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    renv/library/
    Ignored:    renv/staging/

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/figures.Rmd) and HTML (docs/figures.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd dd41748 FloWuenne 2024-08-07 Fixed links in rendered workflowR report.
html b717117 FloWuenne 2024-03-21 Build site.
Rmd e576a1c FloWuenne 2024-03-21 wflow_publish("analysis/figures.Rmd")
html a2cf304 FloWuenne 2024-03-21 Build site.
Rmd 82f107f FloWuenne 2024-01-21 Updates to Molkart analysis.
Rmd f4d5c82 FloWuenne 2024-01-15 Latest update to Seurat analysis with reprocessed data.
html 2dcd178 FloWuenne 2023-12-06 wflow_publish("*")
Rmd 5dee03d FloWuenne 2023-09-04 Latest code update.
html 5dee03d FloWuenne 2023-09-04 Latest code update.
html d7ea71e FloWuenne 2023-08-11 Build site.
Rmd 64318a3 FloWuenne 2023-08-11 wflow_publish(c("analysis/molkart.process_quantifications_seurat.Rmd",
html 67e546d FloWuenne 2023-07-23 Build site.
html 59f6eae FloWuenne 2023-06-13 Build site.
Rmd e5d5982 FloWuenne 2023-06-13 Update Figure list.
html 5816aca FloWuenne 2023-06-12 Build site.
Rmd 3b5ca40 FloWuenne 2023-06-12 Added code for supplementary Figures.
html 3b5ca40 FloWuenne 2023-06-12 Added code for supplementary Figures.