Last updated: 2024-08-07
Checks: 2 0
Knit directory: mi_spatialomics/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | dd41748 | FloWuenne | 2024-08-07 | Fixed links in rendered workflowR report. |
| html | a2cf304 | FloWuenne | 2024-03-21 | Build site. |
| Rmd | 56559c7 | FloWuenne | 2024-03-21 | Cleaned up repository. |
| Rmd | f4d5c82 | FloWuenne | 2024-01-15 | Latest update to Seurat analysis with reprocessed data. |
| Rmd | 2d9b909 | FloWuenne | 2024-01-09 | Pushing latest changes. Updating molkart data. |
| html | 2d9b909 | FloWuenne | 2024-01-09 | Pushing latest changes. Updating molkart data. |
| html | b267494 | FloWuenne | 2023-12-06 | Build site. |
| Rmd | 2dcd178 | FloWuenne | 2023-12-06 | wflow_publish("*") |
| html | 2dcd178 | FloWuenne | 2023-12-06 | wflow_publish("*") |
| Rmd | 5dee03d | FloWuenne | 2023-09-04 | Latest code update. |
| html | 5dee03d | FloWuenne | 2023-09-04 | Latest code update. |
| html | 67e546d | FloWuenne | 2023-07-23 | Build site. |
| html | 3b5ca40 | FloWuenne | 2023-06-12 | Added code for supplementary Figures. |
| html | 51754b9 | FloWuenne | 2023-06-12 | Build site. |
| html | d764fa8 | FloWuenne | 2023-06-12 | Build site. |
| Rmd | 62020bf | FloWuenne | 2023-06-12 | Configure site header. |
The raw Molecular Cartography data was processed using the nf-core/molkart pipeline (revision:
81eafe9f9993d4daf16371ba3804ce9ae08053ad). The configurations,
parameters and models used to reproduce the processing can be found in :
./pipeline_configs/nf-core_molkart.
All downstream processing after nf-core/molkart was performed in R and Python using scripts provided and documented in this repository. See Data analysis - Molecular Cartography for more details.
Raw Lunaphore images were processed using MCMICRO. The configurations, parameters
and commands used can be found in :
./pipeline_configs/mcmicro.
Downstream processing after MCMICRO was performed in R and Python using scripts provided and documented in this repository. See Data analysis - SeqIF for more details.