Hackathon resources

• Getting started with Nextflow

  Nf-core training October 2022

  Session 1

  Introduction to Nextflow
  Getting started with Nextflow
  Simple RNA-Seq pipeline
  Managing dependencies & containers

  Session 2

  Channels
  Processes
  Operators
  Modularization - DSL2 workflows
  Nextflow configuration
  Deployment scenarios

  Session 3

  nf-core create pipelines
  nf-core schema
  nf-core modules
  Tower

• MCMICRO resources

  MCMICRO paper

  MCMICRO website

  MCMICRO github page

  Dockerhub for MCMICRO containers